St. Margaret's School is situated in the centre of the historic town of Midhurst, West Sussex, completely surrounded by areas of outstanding natural beauty and within a short drive from the coast. The school is located close to the West Sussex - Hampshire and Surrey borders, equidistant from the towns of Chichester, Petersfield and Haslemere.

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The school can be reached by public transport from Haslemere and Petersfield railway stations.  Buses are also organised by the school, with routes covering the school's catchment area.